rs49673331 SNP Detail

Summary

• ID
  rs49673331
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAAAAAAA ATCCCGTGCT TAAGTTTGTT TTATATATCT
  CAATATTTTA TTCTTCCATC GTATTGAAGG TGTCAGGAAT GCTTAAGAAA CCATGTTTCC
  W
  GCAGCAACAG CTACTAGCTG GAGTCTCCCT TGTTTTTGTC AAGAAGGCAC ACTTGATGCC
  TTTCAAAGTC TCTGCAGGAT TTTTCTGTCA GAGAATCCCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198238	NES16702759	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49673331					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198238	NES16702759	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053897 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	100 bp downstream
Tssr47227	transcription start site region 47227	1964 bp downstream
Tssr47228	transcription start site region 47228	1901 bp downstream
Tssr47229	transcription start site region 47229	1880 bp downstream
Tssr47230	transcription start site region 47230	1855 bp downstream
Tssr47231	transcription start site region 47231	1825 bp downstream
Tssr47232	transcription start site region 47232	1678 bp downstream
Tssr47233	transcription start site region 47233	1628 bp downstream
Tssr47234	transcription start site region 47234	1593 bp downstream
Tssr47235	transcription start site region 47235	835 bp downstream
Tssr47236	transcription start site region 47236	796 bp downstream
Tssr47237	transcription start site region 47237	776 bp downstream
Tssr47238	transcription start site region 47238	717 bp downstream
Tssr47239	transcription start site region 47239	712 bp downstream
Tssr47240	transcription start site region 47240	693 bp downstream
Tssr47241	transcription start site region 47241	664 bp downstream
Tssr47242	transcription start site region 47242	639 bp downstream
Tssr47243	transcription start site region 47243	621 bp downstream
Tssr47244	transcription start site region 47244	582 bp downstream
Tssr47245	transcription start site region 47245	565 bp downstream
Tssr47246	transcription start site region 47246	511 bp downstream
Tssr47247	transcription start site region 47247	457 bp downstream
Tssr47248	transcription start site region 47248	398 bp downstream
Tssr47249	transcription start site region 47249	337 bp downstream
Tssr47250	transcription start site region 47250	199 bp downstream
Tssr47251	transcription start site region 47251	134 bp downstream
Tssr47252	transcription start site region 47252	82 bp downstream
Tssr51812	transcription start site region 51812	1811 bp upstream
Tssr51813	transcription start site region 51813	1794 bp upstream
Tssr51814	transcription start site region 51814	820 bp upstream
Tssr51815	transcription start site region 51815	774 bp upstream
Tssr51816	transcription start site region 51816	741 bp upstream