rs49673507 SNP Detail

Summary

• ID
  rs49673507
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54868299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG CTCCACACCC AGGCCCGGCT
  K
  GCTGTCTTTA GCCCTCTACC AACCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss139566965	ENSMUSSNP5501554	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss324638701	CHEV_14_55249679	CHEVERUD	SCREENING_POP	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49673507					SNP	T	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54868299 () rs orientation: forward

Symbol	Name	Function Class
Cdh24	cadherin-like 24	389 bp downstream
Cpgi6468	CpG island 6468	1227 bp proximal
Psmb11	proteasome (prosome, macropain) subunit, beta type, 11	1286 bp downstream
Rr299444	regulatory region 299444	within coordinates
Tssr128611	transcription start site region 128611	1442 bp downstream
Tssr128612	transcription start site region 128612	1461 bp downstream