rs49673946 SNP Detail

Summary

• ID
  rs49673946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153137150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCTCGTGTCG AAAGGAAGGA AGAAGAGAAT CTTAAATATC
  TTGCATCAGT TGTTTCGCAT TGCTAATTTT AAAAATATAC CTTTTCTACC TTTTCTTTTT
  Y
  TTTTTTTTTT TTTTTTTTTT TTTTTTGGAG ACAGGTTTTC TCTGTGTAGC CCTGGCTGTC
  CTGGAACTCA CTTTGTAGAC CAGGCTGGCC TTGAACTCAG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145739158	ENSMUSSNP2371848	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49673946					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153137150 () rs orientation: forward

Symbol	Name	Function Class
Lamc1	laminin, gamma 1	within coordinates
Rr19802	regulatory region 19802	950 bp distal
Rr19803	regulatory region 19803	851 bp proximal
Rr31194	regulatory region 31194	1652 bp proximal
Tssr14256	transcription start site region 14256	1063 bp downstream