rs49674392 SNP Detail

Summary

• ID
  rs49674392
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24005176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCG CAGCGACAAG TTGAACGCTC
  K
  ATGAATAGGC GTGAGGGGCG GGTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145332673	ENSMUSSNP2333381	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325327337	CHEV_17_23923169	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49674392					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24005176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	within coordinates
Flywch2	FLYWCH family member 2	121 bp upstream
Rr523143	regulatory region 523143	132 bp distal
Rr523144	regulatory region 523144	within coordinates
Rr523145	regulatory region 523145	170 bp proximal
Rr523146	regulatory region 523146	1178 bp proximal
Tssr146663	transcription start site region 146663	119 bp upstream
Tssr146664	transcription start site region 146664	80 bp upstream
Tssr146665	transcription start site region 146665	within coordinates