rs49674580 SNP Detail

Summary

• ID
  rs49674580
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153337953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGAACA GGTTTGGACT
  CCTTAACACT CTGCAGGCAG TGACTGTGAA TTCCACCCAA TCTCCTGGGA GATACCACTG
  CTACCACACA ACACAGGGAG GAGGTTCCTG CTCTCAGCTC GCTTCCCTGG CTTCTGCTTC
  TACAACCAGT ATCTTTTCCC ATGCAGTATC TTTTCTGGGG AAAGAAGTAC GAAAAGCAAC
  G
  AAATACAGCA CACCCCCTCT GATCTTGTAT GTCCGTAAGG GCAGCAGCCA ATCGAAGCAC
  ACCCTCACTG ATCCGGTCTG TCTGTAAGGG CGGTGGCCAA TCACAGCTGA TCACCCCCAC
  TGACCTCTTA CGTCTTCAAG GGTGGAAGCC AATCTCATTT CCCAGAGTTC AGACTGAATG
  GGCAGCAAGT TCTGTCACCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136110164	ENSMUSSNP817534	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs49674580					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153337953 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587712	regulatory region 587712			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32432	transcription start site region 32432			1387 bp downstream
Tssr36231	transcription start site region 36231			1191 bp upstream
Tssr36232	transcription start site region 36232			1149 bp downstream
Tssr36233	transcription start site region 36233			1201 bp downstream