rs49674755 SNP Detail

Summary

• ID
  rs49674755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27254611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTGCCT GAGGTCAGGG
  TTGGGTCTAA GTTCCCCTCC CCCCTTCCTC TCCACCTTTC CACCCCTTCT TTGGCTTTTT
  TGAGACAGGG CCTTAGGCTT TTGCCTTGAC TGTCCTCAAG CTCATGGTGC TATTACACCG
  CCTCCTGAAT GCTGGGATTC TAAAGCTGTA AGCATGGTTG GTGCTTTGGA TTCAAGACCT
  Y
  GAAGGACGTA GCATGTGGAT TCTGTAAATG GTATTTCTAG AATTGAGTTT TGAGAGCTGT
  CTTTTTTTTT TTTTAAGATT TGTTTATTTA TTATATGTAA GTACACTGTA GCTGTCTTCA
  GACGCTCCAG AAGGAGTCAG CTCTTGTTAC GGATGGTTGT GAGCCACCAT GTGGTTGCTG
  GGACTTGAAC TCAGGACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60985703	NES16135632	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49674755					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60985703	NES16135632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27254611 () rs orientation: forward

Symbol	Name	Function Class
2310022A10Rik	RIKEN cDNA 2310022A10 gene	within coordinates
Cpgi18668	CpG island 18668	1534 bp distal
Gm45975	predicted gene, 45975	1358 bp upstream
Gm74065	predicted gene, 74065	60 bp downstream
Pld3	phospholipase D family member 3	1968 bp upstream
Rr167329	regulatory region 167329	610 bp distal
Tssr65296	transcription start site region 65296	1884 bp downstream
Tssr65297	transcription start site region 65297	1495 bp upstream
Tssr71427	transcription start site region 71427	1937 bp upstream