rs49675015 SNP Detail

Summary

• ID
  rs49675015
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45866944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCCGCT CGGAGAGTGA
  CTCTGGTTCT GTTAGGCGGT CACACAAACC CGGAAAAGCT CGCTTTTGCA CACCTCAGAG
  TTAGATCCCG CTGGACCCTG GACCCCGGGC TGGCGCGGCC GGCATGTCGG ATGCGCGGAA
  GGGGCCGGAC GAGGCGGATG ATAGCCAGTG TGACTCTGGC ATAGAGTCGC TGCGCTCTCT
  R
  CGCTCCCTGC CTGAACCTAC TGCGGCCCCA GGCTCCGGAT CATCCCAAAG CGGCTGCCCA
  CAGCCTTGGA GACATGCTCC GGAGACCCAC AAGGAACCAG AGAAAGAAGA TGCGGATGGA
  GAGCGAGCGG ACTCCACTTA TGCCTCCTCC TCTCTCACTG AATCCTTCCC CTTACTGGAG
  AGACCCGAAG CCAAGGATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259845	NES15755747	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49675015					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259845	NES15755747	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45866944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	within coordinates
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	within coordinates
Rr405302	regulatory region 405302	245 bp downstream
Rr527427	regulatory region 527427	1044 bp distal
Rr527428	regulatory region 527428	297 bp distal
Rr527429	regulatory region 527429	693 bp proximal
Tssr144787	transcription start site region 144787	345 bp downstream
Tssr144788	transcription start site region 144788	304 bp downstream
Tssr144789	transcription start site region 144789	272 bp downstream
Tssr144790	transcription start site region 144790	219 bp downstream
Tssr144791	transcription start site region 144791	201 bp downstream
Tssr144792	transcription start site region 144792	118 bp downstream
Tssr144793	transcription start site region 144793	241 bp upstream