rs49675324 SNP Detail

Summary

• ID
  rs49675324
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80141877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACG GTGAAGATGA GGGAGCTCTG
  K
  GTTAATGAAA GGAACAGCCT GAATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148216318	ENSMUSSNP664197	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss325030592	CHEV_15_80088106	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49675324					SNP	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80141877 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	135 bp downstream
Cpgi7369	CpG island 7369	1323 bp distal
Rr505934	regulatory region 505934	167 bp proximal
Tssr132203	transcription start site region 132203	1598 bp downstream
Tssr132204	transcription start site region 132204	1327 bp downstream
Tssr132205	transcription start site region 132205	756 bp downstream
Tssr132206	transcription start site region 132206	541 bp downstream
Tssr132207	transcription start site region 132207	490 bp downstream
Tssr135433	transcription start site region 135433	1812 bp upstream
Tssr135434	transcription start site region 135434	135 bp upstream