rs49675452 SNP Detail

Summary

• ID
  rs49675452
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGTCTT GAATGCCTCG
  TGCATTTTCT TGAAATCCTT GGATGCTCTT TGGAATAAGT ACAAGGATAA GTCAATGATG
  TAGTCTCTGG TAAATGTGTA GTCTCCCTCA CAGGGTTCAG ATTTCAGCTC ATTTTCTATG
  ATCTTCAAGA TTTCATGAAA GTAATTGTGA CTGTAATCAC GCTTTTGCTT CCAAATGTTT
  G
  TAAGTGTTTC TGAAAATTTT AACCAAATGT TGTTGGTGGT CTTTTTGATG GATTCAACAT
  GACAGGTTTC TGAACTCTTT CTATGTAAAT GGTATCTTTT TTTCATTTGA ATATGTTTGT
  CATACAAGAT TTCAAACTTT TCTCTAGACT TTATTTTTAG TCTTTCCACA ATATTTTTGT
  CCTTCTTGAA ATACTCCAGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145614809	ENSMUSSNP4356710	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49675452					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104895 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74119	transcription start site region 74119	1717 bp upstream
Tssr74120	transcription start site region 74120	1700 bp upstream
Tssr74121	transcription start site region 74121	1637 bp upstream
Tssr74122	transcription start site region 74122	1620 bp upstream
Tssr74123	transcription start site region 74123	1587 bp upstream
Tssr74124	transcription start site region 74124	1542 bp upstream
Tssr74125	transcription start site region 74125	1531 bp upstream
Tssr74126	transcription start site region 74126	1495 bp upstream
Tssr74127	transcription start site region 74127	1344 bp upstream
Tssr74128	transcription start site region 74128	1264 bp upstream
Tssr74129	transcription start site region 74129	733 bp upstream
Tssr74130	transcription start site region 74130	684 bp upstream
Tssr74131	transcription start site region 74131	473 bp upstream
Tssr74132	transcription start site region 74132	297 bp upstream
Tssr74133	transcription start site region 74133	352 bp downstream
Tssr74134	transcription start site region 74134	579 bp downstream
Tssr74135	transcription start site region 74135	662 bp downstream
Tssr74136	transcription start site region 74136	730 bp downstream
Tssr74137	transcription start site region 74137	796 bp downstream
Tssr74138	transcription start site region 74138	826 bp downstream
Tssr74139	transcription start site region 74139	860 bp downstream
Tssr74140	transcription start site region 74140	915 bp downstream
Tssr74141	transcription start site region 74141	1315 bp downstream
Tssr74142	transcription start site region 74142	1458 bp downstream