rs49675521 SNP Detail

Summary

• ID
  rs49675521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170785804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC TTTTCAGGTT GCTATGACAA
  Y
  CCCTCAGGGA CTTGGATGAT TCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146148860	ENSMUSSNP3695084	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320114971	CHEV_1_172888366	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49675521					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170785804 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	382 bp downstream
Gm70986	predicted gene, 70986	within coordinates
Rr20517	regulatory region 20517	597 bp proximal
Rr20518	regulatory region 20518	1197 bp proximal
Rr20519	regulatory region 20519	1596 bp proximal
Tssr284	transcription start site region 284	1659 bp downstream
Tssr14949	transcription start site region 14949	660 bp downstream
Tssr14950	transcription start site region 14950	1504 bp downstream
Tssr14951	transcription start site region 14951	1582 bp downstream
Tssr14952	transcription start site region 14952	1839 bp downstream
Tssr14953	transcription start site region 14953	1854 bp downstream