rs49675611 SNP Detail

Summary

• ID
  rs49675611
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76560161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGAGGAG ACCCACTGTT
  ATCTGTACTT AGATCAACTT TTTCCTCCCT ACCAGGCTCA GACATTTTCC CTAAATTCAG
  GTCCCCGAGG TGGACAGCCT TGGGGGTAGC TGGATCACCC CAGTCTGCTG GAGCTCACTT
  ATCTCCATGG GCAGAGAGCC CCGGGCCCTG GATGGGTAGT TAGCATGATT GAGGCCTAAG
  W
  TAGCATGTAT GGGCTAAGTT CCTGTCCTCA CAGTGACTGA CTGTGGGGAC CCTGCTAGGG
  GAAGAGACTC ACGATCTGCA TCCTTCCTCA GGGCCTGCCC TCGGCCACAC CCTCTGCTCC
  CAGTGCCCCG TTGAGGAGGG AGGGAGGAAG AGAGTGAATG AAGCATGCTA TGTCCCACAG
  TCCCCTCCTC CCAGGCCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61288902	NES16903809	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49675611					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288902	NES16903809	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76560161 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Cpgi1751	CpG island 1751	701 bp distal
Rr434319	regulatory region 434319	1831 bp proximal
Tssr3254	transcription start site region 3254	1614 bp downstream
Tssr3255	transcription start site region 3255	1871 bp downstream
Tssr3256	transcription start site region 3256	1920 bp downstream
Tssr94201	transcription start site region 94201	815 bp downstream
Tssr98205	transcription start site region 98205	888 bp upstream
Tssr98206	transcription start site region 98206	810 bp upstream
Tssr98207	transcription start site region 98207	1651 bp downstream