rs49675830 SNP Detail

Summary

• ID
  rs49675830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72901183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG ATTCAGCCTT GGTTGTGGAG
  Y
  CCTTTCTGCC TTGCTGTTTC TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60750498	NES16391817	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49675830					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750498	NES16391817	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72901183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	341 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr22903	regulatory region 22903	1818 bp proximal
Rr34508	regulatory region 34508	1984 bp distal
Rr34509	regulatory region 34509	within coordinates
Tssr7342	transcription start site region 7342	340 bp upstream
Tssr7343	transcription start site region 7343	1875 bp upstream
Tssr12190	transcription start site region 12190	1715 bp upstream
Tssr12191	transcription start site region 12191	985 bp upstream
Tssr12192	transcription start site region 12192	505 bp upstream
Tssr12193	transcription start site region 12193	352 bp upstream
Tssr12194	transcription start site region 12194	153 bp upstream
Tssr12195	transcription start site region 12195	177 bp downstream
Tssr12196	transcription start site region 12196	271 bp downstream
Tssr12197	transcription start site region 12197	289 bp downstream
Tssr12198	transcription start site region 12198	305 bp downstream
Tssr12199	transcription start site region 12199	1190 bp downstream