rs49677049 SNP Detail

Summary

• ID
  rs49677049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97938952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTCAAC CCTTTCTTGG
  ATCTCTTACT TTCTTTTTAC ATTTACAGCA GCCAAGAGAA TTATTCCCTA GGGCTTGGTG
  CTAAGTTCCT ATAAATCCTT ACATATTTAA ACAGCAACTG CCACAGAACT AAATGTAAGC
  TCTATCATTG GAAAGCTCCA ACCTGGAACT TCAAAATAAC AAAAATTAGT TCCCAAGCTT
  R
  CCTTGTCCAA TACGGAAGAA AGATAAAGAT GGGGAATGGA CAGCAGCTAT TTAAGCACAG
  TCAGCTCTAC TGTTTGATCA TAATCAGCAC ATGCATGTTT ACTCATGTTT CACTTAGTAA
  AGGTAGTAGT AATGCCATGC ATCTATTTTA TAAGTAGTCC CTGTATAGCT AAATACCCAA
  CTATGCATAC TCTCCCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss137982469	ENSMUSSNP3804028	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49677049					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97938952 () rs orientation: forward

Symbol	Name	Function Class
Rr258643	regulatory region 258643	1449 bp proximal
Rr269010	regulatory region 269010	1214 bp proximal