rs49677268 SNP Detail

Summary

• ID
  rs49677268
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29475974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATGAG TGGACTGAGG
  GACCTGAGTT TAGGGTAGAC AATGAGAGAT AATGGTAAAG CGTGCTTTGG GATAAGAAAC
  TTTTCTATGC TATTCCCTTA ATCTGTGGTA GTGCTAGGTG TAAACGAGTT ACCCTCAAGA
  GATGATGATG GCTGTGGCCA AAGAGGAGAC CGGAAAAACT CCAAAGTGAA GAAAAACAAC
  S
  AAAATCATAA CGAAAAACGT TTACTTGACT CGTACTCTCA ACAAGTCACT GAAACCTTCC
  CACGATCTTA TGAAGTCCGT ACCGTGATTC CATACAACAG ATAAAGTCGA GGCACAGAGT
  TGACAACACA CCTCTAAGTT CACACTGTGA ACGGGCTGGG CCAGCAGCCG GAGAACCCTA
  GCTCCACTAC CTACCCTGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
ss131895988	ENSMUSSNP4692610	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
ss323610909	CHEV_11_29425974	CHEVERUD	SCREENING_POP	f	SNP		G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
rs49677268					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29475974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	80 bp proximal
Gm57396	predicted gene, 57396	5 bp downstream
Mtif2	mitochondrial translational initiation factor 2	434 bp upstream
Rr369145	regulatory region 369145	320 bp upstream
Rr444173	regulatory region 444173	within coordinates
Rr444174	regulatory region 444174	400 bp proximal
Rr444175	regulatory region 444175	494 bp proximal
Tssr100719	transcription start site region 100719	433 bp upstream
Tssr100720	transcription start site region 100720	449 bp upstream
Tssr107213	transcription start site region 107213	369 bp downstream