rs49677369 SNP Detail

Summary

• ID
  rs49677369
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86427228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAATTCAC AGTCCTAAGT GTCTACAGCT TTTCGGCACC
  AAAGAAAGGT CTAGGTGCTT TGCCCTGTTC CTCAGTGTGT ATGTCATGGG GTATTTACTC
  R
  TTCTAAATAA GCAATGATCA CTTTCAGATG ACTAGCTGGC CTTCTGCTTC CCTTCCTTCT
  TATAGCTCGA GTAGCCGTGG CCCAGAGCAG TTCTCTCAAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61435734	NES16815196	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49677369					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61435734	NES16815196	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86427228 () rs orientation: forward

Symbol	Name	Function Class
D9Mit111	DNA segment, Chr 9, Massachusetts Institute of Technology 111	1338 bp proximal
Dop1a	DOP1 leucine zipper like protein A	within coordinates
Gm17530	predicted gene, 17530	1507 bp downstream
Rr211041	regulatory region 211041	1428 bp distal
Tssr86395	transcription start site region 86395	55 bp upstream
Tssr86396	transcription start site region 86396	81 bp upstream