rs49677550 SNP Detail

Summary

• ID
  rs49677550
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67600569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA AAAGGAACTT GCCAGATGTT
  G
  TGGATATGCC TTCAATCACT TGGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss149266946	ENSMUSSNP5881401	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324392147	CHEV_13_67553386	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49677550					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67600569 () rs orientation: forward

Symbol	Name	Function Class
Gm38307	predicted gene, 38307	within coordinates
Rr388629	regulatory region 388629	within coordinates
Rr482020	regulatory region 482020	878 bp distal
Rr482021	regulatory region 482021	336 bp distal
Tssr120253	transcription start site region 120253	1191 bp downstream
Tssr123102	transcription start site region 123102	812 bp upstream
Zfp874a	zinc finger protein 874a	826 bp upstream