rs49677647 SNP Detail

Summary

• ID
  rs49677647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121806478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGGGAAG TAGATTACAG GAACATTTTT TGGAGCCCAG
  GGGAGAAAGG TCATCTGCTA ACTGGAGAGA TGGCTCATTG TTTAAGAGTG CTTGCTGAAT
  Y
  GACCTGAATT TAGTTCTGAA TGCCACTCAC AGCTGCCTAT GGCTTCAACT CAAGCTGCAA
  AGGGATTCAG TGCCTCCGGT CTCTGAGAGC ACCTGTGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135733471	ENSMUSSNP4725970	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320907637	CHEV_3_121715747	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49677647					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121806478 () rs orientation: forward

Symbol	Name	Function Class
Arhgap29	Rho GTPase activating protein 29	Intron
Rr584215	regulatory region 584215	within coordinates