rs49678349 SNP Detail

Summary

• ID
  rs49678349
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40641295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAACCAT GTCTCAAAGA ACAAAAACAA CAAGAACAAA
  AATAATAATT ATTTGAGAGG GTTGAAGGGC CTGGGTCAAG GAAGACATTA GTGTTTAGTA
  A
  TAGTAATAAT AATAATAATA ATAATAATAA TAATAATAAT AAGGCTGGAG AGATGGCTCA
  GCGGTTGAGA GCACTGACTG CTCTTCCGAA GGTCCTGAG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss136336750	ENSMUSSNP2401336	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49678349					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40641295 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clmp	CXADR-like membrane protein			Intron
				Noncoding-Transcript-Variant
Cpgi21598	CpG island 21598			717 bp proximal
Gm68229	predicted gene, 68229			within coordinates
Gm68234	predicted gene, 68234			948 bp upstream
Rr1916	regulatory region 1916			within coordinates
Rr676903	regulatory region 676903			458 bp proximal
Rr676904	regulatory region 676904			959 bp proximal
Rr676905	regulatory region 676905			1593 bp proximal
Tssr84462	transcription start site region 84462			955 bp upstream
Tssr84463	transcription start site region 84463			1004 bp upstream