rs49678897 SNP Detail

Summary

• ID
  rs49678897
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99868454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCACAGG GGACACAAGA
  CAGCCTCCAT TTTGGTTTCA AAATGTAGAT GCTTAGAAGG AACCATTAGT GAATTACAGG
  TATCTGGAGA AAGAGTCCCA GCCTATGTTT AAAAAAACAC CAAATAGGAG AAGCACAGTC
  CTTATTCATT CCCAAAAAAA AAAAAAAAAA AATTAAAGTT GCCACTCTGT TGGCCAGCTG
  M
  CTTCAGAGGC AGCCGTATGT AGTTAGAGGT TTCCTAACAT GAAAGTCATT GACTCCTGGC
  CCTGTTGCAT TTGATCAAAG CTGAATAGAG TAAAACAGCA CTCACTTCAC ATGAAGACTC
  CCAAGTGGAA AGAGCTAAAC AAAAGGATGC ACCACAGAGT TCAGCTCCAG CCCCTGCTCC
  CTGGGACTTG CCGCCAGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148920107	ENSMUSSNP2704162	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs49678897					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99868454 () rs orientation: forward

Symbol	Name	Function Class
A930011G23Rik	RIKEN cDNA A930011G23 gene	within coordinates
Gm73153	predicted gene, 73153	within coordinates
Rr119570	regulatory region 119570	1854 bp distal
Rr119571	regulatory region 119571	347 bp proximal
Tssr52054	transcription start site region 52054	1387 bp downstream