rs49679328 SNP Detail

Summary

• ID
  rs49679328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61738645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCACGA GAACCAGGAG
  TGGGAGCTGG GGTCAGTGAA CCTGTACTTT GTTATCTGCG CCTGGTTGCG GGAGGCCAAG
  ATTAGTTCCA AAGAAAGTTG TGGCGCTTAC TCAAGGCAGG CAGCCCTTTT CCCTCACATA
  AACAACAGCA ACCACCTTCC TGCCTCCCAG CTGCAGGAGC TTTGCAGCTA AAGGCTAAAA
  R
  GCTAGGTTCT GGAGCCCTCC CAGGGAGGCA GTCATTTAGG TCTATTTAGT CAGCCCACTT
  TCTCTAACAT CAACAGCAAT ACTGAGAACC AACAGGAATG ACCACAGGAC ACGGGATGGC
  CACACCCAGA GGCCCCTGCT GAGTCTCACC CTCATTCCTC CAAAGCTCTT TTCATTAACT
  CTCCCAGCCT CTACACCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61280732	NES16780036	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49679328					SNP	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280732	NES16780036	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61738645 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates