rs49679652 SNP Detail

Summary

• ID
  rs49679652
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41365982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG ACCCATGGGA AGCTGAATGA
  A
  GAAGTGCATG CCCGTAAGAG CAGCG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144675631	ENSMUSSNP1317805	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322633671	CHEV_8_41998299	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49679652					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41365982 () rs orientation: forward

Symbol	Name	Function Class
Rr662625	regulatory region 662625	1789 bp proximal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77037	transcription start site region 77037	1880 bp downstream
Tssr77038	transcription start site region 77038	308 bp downstream
Tssr77039	transcription start site region 77039	1013 bp upstream
Tssr77040	transcription start site region 77040	1058 bp upstream
Tssr77041	transcription start site region 77041	1966 bp upstream