rs49679975 SNP Detail

Summary

• ID
  rs49679975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98940767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGTCAACG CTGTGCAGGT TCCTCCCCTA CTGCTCGAGT
  CAACATCTGT CAGAACTGGA CATGTCTGCT TGAGGCGAGG TGAGGAAATC TCCCGCCTTA
  Y
  GCAACTGGAT TCTCTTCTTT AAAAGATTAT TTTATGTGTA TATGTGTGTG GGGGATGGGT
  CTGTACACAT GCCCATGGAG GCCAGAAAGG GCATAGGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148463640	ENSMUSSNP1803463	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325079664	CHEV_15_98873317	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49679975					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98940767 () rs orientation: forward

Symbol	Name	Function Class
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	within coordinates
Rr509292	regulatory region 509292	1588 bp distal
Rr509293	regulatory region 509293	169 bp distal
Rr509294	regulatory region 509294	1312 bp proximal
Rr509295	regulatory region 509295	1504 bp proximal
Rr509296	regulatory region 509296	1878 bp proximal