rs49680502 SNP Detail

Summary

• ID
  rs49680502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100819536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGGGCA GGGCTAAAGG
  TCTGTGTAGA CTGAGCTTAC AATTCTCTAA CGATAGATTT CCCTTAGGAC AACCCGCAAC
  TGCAGTGAAG AGGGAAACAC ACTGCCAACC TGGTGGAAAG AGCGCCACCT GCCAAAACTT
  CCTGAAATGA CACCGGTTGA CTGACCAGTG ATGTAGCCCA GTGGTAGGTA AGTCCCTTGA
  Y
  TAGCCTATGG GAGACCCTTT GAGTTCCACT CCTAGTACTG AGAAACAACA AAAAAGCTTT
  GCTACTGCCT TCTAAAACAC AACGACTAAT ACTGCTCTAT GAAAGTAAGT AGATATAACA
  TCAATACAGT AAAACAATAA CTGTATCACT GTCTTACAAG ACATATACAT ATTAAACCAG
  GAACTCTACT GTCAATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148928038	ENSMUSSNP25485	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49680502					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100819536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Gm15777	predicted gene 15777			within coordinates
Rr615537	regulatory region 615537			within coordinates
Rr615538	regulatory region 615538			61 bp distal
Rr615539	regulatory region 615539			784 bp proximal
Rr615540	regulatory region 615540			1753 bp proximal