rs49682241 SNP Detail

Summary

• ID
  rs49682241
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89282539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAAAGA CGCCCCGCCC
  CCTGGGCTTG GGACGAAACC TATGGCGTCC TTCCAGAGCC CTCTGGTTTT GCCTCCTGGA
  TATTGCTCTG TTTGCTTTGG CCTTTTCGTC CCCCTCTTGA CATGGAGAGA TGTGATCAGT
  TTTACTGACC TTAATTTCCT CAGCAAAAAC AATACAGACC CAGTGAGTAT TCCCGATGGT
  S
  CCTCTGAGCT AGAGTCAGAT TTCCAGCAGA TCTTGAGGAC AATTCATTTG ACCTCCGTGA
  ATTAAAGTAT CTGTTAGAGA TTTCTTAGGA ATGTTGCAAG GTTTAAAAGG AAAAACAGGA
  AAACGGAGGC AGAGTTCTTA GCACAGACTC GGGCACCAAT GAGATAATAA GTGTTAGCTA
  ATGATATGGT GAATATCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61033129	NES16094196	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49682241					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61033129	NES16094196	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89282539 () rs orientation: forward

Symbol	Name	Function Class
A230065N10Rik	RIKEN cDNA A230065N10 gene	207 bp upstream
Cpgi19393	CpG island 19393	44 bp distal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial	within coordinates
Rr650822	regulatory region 650822	618 bp distal
Rr650823	regulatory region 650823	within coordinates
Tssr67672	transcription start site region 67672	917 bp downstream
Tssr67673	transcription start site region 67673	881 bp downstream
Tssr67674	transcription start site region 67674	839 bp downstream
Tssr67675	transcription start site region 67675	789 bp downstream
Tssr67676	transcription start site region 67676	764 bp downstream
Tssr67677	transcription start site region 67677	600 bp downstream
Tssr67678	transcription start site region 67678	419 bp downstream
Tssr67679	transcription start site region 67679	338 bp downstream
Tssr67680	transcription start site region 67680	309 bp downstream