rs49682953 SNP Detail

Summary

• ID
  rs49682953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129062635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCACAG TCAGCAGTTG
  GCAGAGTTCA CTAGTCATGG TATCCTTCAC ATACTTGGTC GCTGGGCCAT CTATTCACAA
  GTGTAAACCA GTGCACAGCT TTATCCCACA CTTCATGGTT TCTTAGGAAC TCTGGGCACT
  CGTGGGTGTT GGGCTGAGGA CCTGGTCCTT CAGGTGCCAT CCAGGAGTGG CTATGTACCC
  R
  GGACCATTCT CTTGAGTTTA GTGAGCACCA AGTTTGCTCC ATCGTCACTG TCGCCTTGCC
  TTGAGACTCC ATCAGCTCAC ATGAACAAGG AAGAGTAACA TGAGTGCGGC ATGTGACTGC
  TTGTCCCCTC CGTGAGCTAA CGTTCAAGGC TCTTCAGACC CTCACACTTC CTAGTCAGGG
  TCACCAGAAG GCACTATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60840165	NES16015765	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49682953					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840165	NES16015765	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129062635 () rs orientation: forward

Symbol	Name	Function Class
Rr116326	regulatory region 116326	1366 bp proximal
Stx2	syntaxin 2	within coordinates