rs49683452 SNP Detail

Summary

• ID
  rs49683452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117945009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCT CAGGGGGAGC AGAGTTGGCT
  Y
  GCACCCACTC TGTCATTCCA AAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147290689	ENSMUSSNP7031850	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320467714	CHEV_2_117940264	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49683452					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117945009 () rs orientation: forward

Symbol	Name	Function Class
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	1919 bp distal
Rr55415	regulatory region 55415	within coordinates
Thbs1	thrombospondin 1	within coordinates
Tssr19530	transcription start site region 19530	1863 bp downstream
Tssr19531	transcription start site region 19531	1465 bp downstream
Tssr19532	transcription start site region 19532	1423 bp downstream
Tssr19533	transcription start site region 19533	156 bp upstream