rs49683471 SNP Detail

Summary

• ID
  rs49683471
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:18271942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACTACA GTTATGGCAG
  AGGTCTGCTC TCTGGGAGAG CAACAGCTAA GCCCAGTAGT GCAGAAGTCA TCAGATTGGA
  AGGCCATCAG TCAGGGTAGG AGAGCTTCCA GCACACAACA TGCCAAACTC TTACCTGGTT
  TTCTGGAACC TCAGCTTGAG AATGTGCAAG ATAGAACAAA ATGAATGAAA AGGGGATAAT
  S
  AACAATAATC GTGAATGAGA GGAAAGTTCA CAAGAGTCAT TCAGTAGCAA AACAGCCATT
  GTGCTTGGCC ACTAAGGACA AGCTAGAGGC TGAGCTGAGC ACTTTAGAGT GTTCTTACCT
  CTTGACTGCA AGAGCCAAAG GAAGATTACT CATGAGGAGA TGGGAGGTTG GGGAGGACAA
  GTGGCTGGAT GCAGTTTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61577626	NES17527735	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	C	C	C	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49683471					SNP	C	G	G	G	C	C	C	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61577626	NES17527735	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:18271942 () rs orientation: forward

Symbol	Name	Function Class
Gm40879	predicted gene, 40879	within coordinates