rs49684342 SNP Detail

Summary

• ID
  rs49684342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:16239130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCTTC CCCGTTCCCC
  AGTAACTAAG TACTACTTAA AAAATAAGAT CTGTAATAGC CCTTTAGGTG AAGATTTATT
  GTTTCTATTG ATGCTTTCAA TGGTTTTCCT GGGATTTTAT GTGCCAAGGC TGGTTAATTA
  GAAATAATAG TGCTCTGTCC AGAATAACTT TCTTCATGCC ACACTACATT TTATATAAGA
  S
  TTTATATATG CCAGATACAT TGTAGTGTGT TAGTTAACAA ACTATTTTAA TTAATGTTTT
  ATTTCAGCAT ATGAACATCT AGGAATTTTT AATTCATAGA ATTCCAGTTT ATTTTAGTTA
  CAATTGTAAA CTTCAGAATT AGAGGTTAGT TTAAAATTAG TTATTAAACA TTTGTAAGTT
  TAAAAGGACT TTTTTCCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134642384	ENSMUSSNP710211	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49684342					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16239130 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12993	CpG island 12993			1043 bp distal
Gm64384	predicted gene, 64384			1248 bp upstream
Rr397612	regulatory region 397612			1681 bp downstream
Rr573790	regulatory region 573790			1720 bp distal
Rr573791	regulatory region 573791			1259 bp distal
Rr573792	regulatory region 573792			758 bp distal
Tssr833	transcription start site region 833			1348 bp upstream
Tssr28473	transcription start site region 28473			1760 bp downstream
Tssr28474	transcription start site region 28474			1686 bp downstream
Tssr28475	transcription start site region 28475			1658 bp downstream
Tssr28476	transcription start site region 28476			1089 bp downstream
Tssr32661	transcription start site region 32661			1279 bp upstream
Tssr32662	transcription start site region 32662			1122 bp upstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3			Intron
				Noncoding-Transcript-Variant