rs49684480 SNP Detail

Summary

• ID
  rs49684480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:4027087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGGAGGA GAAGGATGAG
  ACTGTTAACC TCCAAACTAA AGAATACATG ATTCTGTGGT TTATTCAAGA TCTTAACAAA
  GTAAGTTCTC ATAGAAAGCT GGTTTCATCA CAGAGAGACA CCGGCAACAA CCAGACCTTA
  GTAATTCACA AGGAAGTATT GAAACACAGA ACCCTTGTAC TAGAAAAAAA AATGCATTTC
  Y
  CCTCCAAGTT ATAGTTAGTT CTTTTTACTT TAGGAAATGC ACATGAATAG AACAAATAAA
  AGATAAAAGC CATATTTTAA ATCTCAGATG ATTAGAATGT GCCAAAAATA TGAAAGAAGC
  AAATTGATCA CATTCGAACT ACCTCCCTTT CCCTAACATA CAAAATTTAG CTATATATCC
  AGCAAAGGAG AAATAAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147038920	ENSMUSSNP2848388	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49684480					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4027087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	1312 bp distal
Gm2093	predicted gene 2093	within coordinates
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	1861 bp upstream
Rr369897	regulatory region 369897	653 bp downstream
Rr498628	regulatory region 498628	1872 bp distal
Rr498629	regulatory region 498629	1558 bp distal
Rr498630	regulatory region 498630	764 bp distal
Tssr133596	transcription start site region 133596	1845 bp upstream