rs49685230 SNP Detail

Summary

• ID
  rs49685230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138287917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCTCTTC CCTTCTACAC CATACATGCA GGGAGGGTCC
  TTAGGTTTCT AGGTCCCCAC AGCTCCATGC CTGGGACTTC GTGAGACTCC GTACTTTCTT
  Y
  CAAAACTCCT CTGTGCACTG GACCCCTCTC CGCAGACAGC CATTCCTAAG GCATTGGCTC
  TTCGTCCTTG CAACAAAATG AACGTCAGTG CTTGATGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135954741	ENSMUSSNP2726285	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49685230					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138287917 () rs orientation: forward

Symbol	Name	Function Class
Gm43726	predicted gene 43726	1595 bp upstream
Gm66723	predicted gene, 66723	within coordinates
Rr586166	regulatory region 586166	1246 bp proximal