rs49685372 SNP Detail

Summary

• ID
  rs49685372
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3646476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACCTTT TCCCACTTAT
  CCATCCTCTG CCCCCCCCTT CATATTTTAT TTGTGTGTGT GTTGAGGGGG CTATTCAGGC
  TACGGTGTAT ATATGAAGGT CAGAGGGTAA CTTGTTGGGG TTGGTTCTTT CCTTCCACTG
  TGTGGGTCTT GGAGATGGAA CTCAGGTTGT CTGGCTTTAT GGCAATGTTG AGCCATGTTA
  T
  TGACCACTTT TCTTTTTTTT TTTTTTTCTT TTTTTTTTTT TTTTTAAAGA TGAGGGCCTC
  CCAGTAGCCC TGGCTAGCTT TGACAGCAAT CACATGGGCC ACCATACTCA GCTTTTGGTG
  GGCATTTTGA ATCAGGGTGT CCTAGCACTC ACTGGCTTGT TACTGCTTCT AGCCTGGGCT
  GGTGTGAAGC TCCTTTCTCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148546613	ENSMUSSNP3292846	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs49685372					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3646476 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr180906	regulatory region 180906	276 bp distal
Rr189485	regulatory region 189485	1925 bp proximal
Rr381636	regulatory region 381636	947 bp upstream
Tssr76064	transcription start site region 76064	44 bp upstream
Tssr76065	transcription start site region 76065	1839 bp upstream
Tssr76066	transcription start site region 76066	1863 bp upstream
Tssr76067	transcription start site region 76067	1878 bp upstream
Tssr76068	transcription start site region 76068	1895 bp upstream
Tssr76069	transcription start site region 76069	1967 bp upstream