rs49685945 SNP Detail

Summary

• ID
  rs49685945
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31092602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTGACTC TTGAGGCCCT TAAATTGCCA GGGCTGTAGA
  AGAGGTCACA TTTGGCCGTA GGATGTTTCC TGGTGGTCAC CTTGTTCTGT ATGTAATTGT
  C
  AACCACTAAC TGAAGGACTG GAGCGCCTGT GACCTGATGC CCTGGGACTG CCCAGGATCT
  TGGCGTCAAA CCATGTTCCT TGGTTTATGG TTCACAATA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145451154	ENSMUSSNP115282	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325357667	CHEV_17_31010573	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49685945					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31092602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8937	CpG island 8937	865 bp proximal
Dnah8	dynein, axonemal, heavy chain 8	within coordinates
Gm9937	predicted gene 9937	233 bp downstream
Gm50252	predicted gene, 50252	within coordinates
Rr330583	regulatory region 330583	599 bp proximal
Rr341199	regulatory region 341199	1202 bp distal
Rr341200	regulatory region 341200	600 bp proximal
Tssr147267	transcription start site region 147267	1403 bp downstream