rs49686071 SNP Detail

Summary

• ID
  rs49686071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61498685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAATCTG TTTGCCATAG
  TTAAGTCATT ATGTTTCTAT AAATGCAGAA CACTTAGTAA GTATAGTAAA AAAAAAGAAA
  TCATGATTAA GGATACACAG AGTGATTATT TTCAGGTATT TTGGACATTC ATTCATAGTG
  TGTTCAATGA AGGTTCATGG CAAAACAACC CACATTGAGT CACCAGAAGC AGGATACCAA
  Y
  GACTTATCAT GGACCAAGTT TCAAGAAACA TGATGTGTGA TCACACACAC ACACACACAC
  ACACACTCAG ACACACAGAG ATAGACAGGG AGAGACAGAA CATAAAACAT ATAGCTCTAA
  ATGGGTTGTC TTTATCACAT CCCTCCCCTC AGACCTCAGA GAATCCCCCT AGAGGAAAGG
  CAGAAACACT GTGAGAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61823463	NES17746822	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49686071					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823463	NES17746822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61498685 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	1590 bp downstream