rs49686188 SNP Detail

Summary

• ID
  rs49686188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57883344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCATTATA CACTTAATTA
  AAATAGTACA AGTGAACTTT TATAAAAACA TGACTGTGAT TTTGGAAGCA AATGGGTACC
  TTTCTGTTAG TATCAGAGTG CTCCATTTTA TGAAAATTAA GCGTCAACCT GCTTGTGCAT
  TAGCACATAT ATTTCAGCAG TAACATATCT GCAAAGTGAT GCCAGCTCTA CACAGCATCC
  Y
  GACTCATTCT TCAGGAGAAC GCTTGCAAGG CAGTTCACCT GGTTATAACT AAGGACTCTT
  TCCTGAAGCC CAGCAAATAC GCATATCTTT CTTTTACATT TGGCTTAGTA TTCTGGGCAA
  GTGCTTCATA ACTAATAGGA GAGGGACATC TGCTAAGCAA TATTACCTGA GTTTTTGAAG
  GAGTAAGGCA TATGGAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61167714	NES16674300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49686188					SNP	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61167714	NES16674300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57883344 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	within coordinates
Pcdh7	protocadherin 7	within coordinates
Rr125228	regulatory region 125228	1343 bp distal
Rr125229	regulatory region 125229	543 bp distal
Rr125230	regulatory region 125230	within coordinates
Tssr46296	transcription start site region 46296	1290 bp upstream