rs49687099 SNP Detail

Summary

• ID
  rs49687099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGGGCTGT TTACTTATGT
  TAATGTCAGC ACAAGAGCAA ACTTCACCCT AACAGTAAAG GCCCACTCAC TACCCAGAAC
  CGCGAAAACA CCACAAAAAT GAATCTTACC TTAACACTTC CTCCACTGTT CAACAGCAAC
  GGGTCCCGGC GTTTCCTAGA AATATTTCAA TACTAGTTTA GAAAACTGAA GTCCATTTTT
  Y
  TAGCGTCGTG TAGACTCTTA CAATCTTAGA ATGTCACTTG CTCAAGTCAG AATCTGGTAC
  CAATGAAATG GTGACAGCTT TGCCAATAAC AAGAACATGC TCTTCCATGG CTAGGAAGGG
  AGACTGCCAC AGGCGGCAGG TCCCAAAGAT ACATGGAGTT TCACAGCCCA AAAATCTAGT
  GTAACCCCAG AGGTGTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60445529	NES15941780	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49687099					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445529	NES15941780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	30 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	1311 bp downstream
Rr397991	regulatory region 397991	874 bp downstream
Rr584523	regulatory region 584523	989 bp distal
Rr584524	regulatory region 584524	854 bp distal
Rr584525	regulatory region 584525	466 bp proximal
Rr584526	regulatory region 584526	1011 bp proximal
Rr584527	regulatory region 584527	1402 bp proximal
Snhg8	small nucleolar RNA host gene 8	within coordinates
Snora24	small nucleolar RNA, H/ACA box 24	29 bp downstream
Tssr31551	transcription start site region 31551	642 bp upstream
Tssr31552	transcription start site region 31552	680 bp upstream
Tssr35502	transcription start site region 35502	422 bp downstream
Tssr35503	transcription start site region 35503	1007 bp downstream