rs49687644 SNP Detail

Summary

• ID
  rs49687644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84572947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAAAAT AGTTTTTCTC
  TGTTATTCCC ATTCTGTCAT CAAAATAGAA ACAATAGATG CCGTTTGTCA TTCCAGCGTA
  GTCAATCCAG AAGCCAGCGA AGGCTAATAC TGAATGTGTA GAATGAGTTC TTCCATATCT
  AGGTTATCGG CAGGCTCCAC TAACTCTGAT ACCTGTAAGG AAGAAGTTGG GAAGCAGCAC
  R
  GGACCTTTCT CATACTGTTC CCTCAGTGCC AGAAGGTCTG GCATTTCAAG CGTGTTTTCT
  TCCCTTTTAA CACATTTAAA ACTTTCAAAA ACAATTCAGC TGTAAAGAAA GGGGACATTA
  GCATAGATAG TTCCCATATA CTCTATACCC AGTTACCACC ATTACAGTCT TATTATTATA
  TAGTGTCACA TGGGATACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60499938	NES16521744	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G		G	G	G	G		G
ss325261876	CHEV_16_84776304	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49687644					SNP	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60499938	NES16521744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84572947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	827 bp distal
Jam2	junction adhesion molecule 2	within coordinates
Tssr139181	transcription start site region 139181	1966 bp downstream
Tssr139182	transcription start site region 139182	1914 bp downstream
Tssr139183	transcription start site region 139183	1885 bp downstream
Tssr139184	transcription start site region 139184	1862 bp downstream
Tssr139185	transcription start site region 139185	1821 bp downstream
Tssr139186	transcription start site region 139186	1765 bp downstream
Tssr139187	transcription start site region 139187	1745 bp downstream
Tssr139188	transcription start site region 139188	1727 bp downstream
Tssr139189	transcription start site region 139189	1636 bp downstream
Tssr139190	transcription start site region 139190	1620 bp downstream