rs49687702 SNP Detail

Summary

• ID
  rs49687702
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3469380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCCTCA ACTTTACTGC
  TGGCCACGCC AGTACTTCTT ACAATTCTTA GAAAGCATGG TCCCTGAGAA CCTTAAGTAC
  AAGTGCACTT CACTCCGCTT TACAATCTAA CTGCCAAGCC AACCAAGTCT TCTGACCTGA
  CCTCTCTACA GCAGTAGCCA CAACCTCACA CTCCTTAGGG GCAATGTATG ATTTTTCTCT
  S
  TATTTTTGTT TTTGTTTTTT TTCTACTTTC TTTATGGCCA TGGCTTCTTG GTCCCTCTTT
  GTATTAGATA CTTGTTTCTG TTTTTGAGAC TCTGAGAAAC ACTCTAAAGC CATATGTCAC
  ACAGGCAACT CGGGTAACTC CAGGTCACTG AGATTCCAGC TCTAACACTC CTTCTGGGCA
  GCCTTCTCAC CTCACTATGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146262161	ENSMUSSNP654343	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
ss320204618	CHEV_2_3385615	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49687702					SNP	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3469380 () rs orientation: forward

Symbol	Name	Function Class
Gm13184	predicted gene 13184	228 bp upstream
Suv39h2	suppressor of variegation 3-9 2	within coordinates
Tssr15896	transcription start site region 15896	245 bp upstream