rs49688421 SNP Detail

Summary

• ID
  rs49688421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132516607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGTTCAT GTAATAAGAG AGTTCTAAGA AAAGTGATAA
  CAGCATTTTT CATTTCAGTT AATACTACTC AGTTATAGAT GGAGAAACCA CAGCTTAGCT
  R
  TGTTTTCTTT TTGGCTATTG GTATAGATAG GTACAGCCTT CAAATGAGCC TAAGGAGCTC
  ATTGTTTACA TTATTTAAAT TGGTTCGCAT GGGCTGAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135914787	ENSMUSSNP5480017	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49688421					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132516607 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42876	predicted gene 42876			1379 bp downstream
Rr375756	regulatory region 375756			1357 bp upstream
Rr585456	regulatory region 585456			1033 bp proximal
Rr585457	regulatory region 585457			1414 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant