rs49689094 SNP Detail

Summary

• ID
  rs49689094
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87956749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAGAGGA TCTTCAGCGG
  GCAAATAAAC ACACAGAAGT CTAATTGTCA AATAGAAACC CAAGTAGAAG CTCGGGGAAG
  ACGCTTGGCT GAGTGTGAAC ACTTTCAATC CCCGTGCTCA AGGAGAGAGA GGATAGCTCG
  GGCCCACCTG GTTTCCATAG TGAGTTCCAG GCCAGCTAGG GCTATGTATG CAAGGAGGGT
  M
  ATGTGTTGAT GTCTGTGAGG ATAAACGAGA GGACAGTGTG AGTATTCATT ATCTGAGGAT
  GAGTGGTAAG TGAATGTGTG GGGTATTTTG CCTACGTTTA GTTAACAATT TTTGTTTCAG
  CAAGGTACCT CTGGTACTAA TAGAGCTGTT CAGAGAATTG GTACCGTGGG ACCAGTTTTT
  AGACACCCCC CCCAAAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60290178	NES15780222	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49689094					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60290178	NES15780222	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87956749 () rs orientation: forward

Symbol	Name	Function Class
Epcam	epithelial cell adhesion molecule	within coordinates
Tssr146205	transcription start site region 146205	1805 bp downstream
Tssr146206	transcription start site region 146206	976 bp downstream
Tssr146207	transcription start site region 146207	1111 bp upstream
Tssr146208	transcription start site region 146208	1131 bp upstream
Tssr146209	transcription start site region 146209	1170 bp upstream
Tssr146210	transcription start site region 146210	1244 bp upstream
Tssr146211	transcription start site region 146211	1501 bp upstream