rs49689104 SNP Detail

Summary

• ID
  rs49689104
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39304491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCTCCCC GGCTCCTGTC TCTATGGGGA TGTCCCTACA
  TCTCCAACCT CACCAGACTT CTAAACTCAC TGGGGCCTCC ACTCTCTTGA TGGTTAGGTG
  M
  TTCTTCTCTG ACTAAACCCA GACCTGGCAG TCCTCTGCTG TATATGTGAT GGGGGTCTCA
  TATCACCTGA TTATGTTGCT TGGTTGGTGT TCCAGGGTCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss60312158	NES15803726	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs49689104					SNP	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312158	NES15803726	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39304491 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	559 bp downstream
Tssr156338	transcription start site region 156338	526 bp downstream
Tssr156339	transcription start site region 156339	500 bp downstream
Tssr156340	transcription start site region 156340	376 bp downstream
Tssr156341	transcription start site region 156341	350 bp downstream