rs49689643 SNP Detail

Summary

• ID
  rs49689643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61316016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCCGTTC CTTCCTCTCC CCATCTCCCC CTCCCTTCCA
  GTGCCATTGA AACATCAGTC TTATTTTTTT CTCACTCCTA CGCCTGTCCT TAAGCATGTT
  R
  TCAGTATATT ACTCCATAAT ACATGAAAAG ATAAATAGAA AATTTCAGGA GGATTAGCAG
  GCACACATTG GGCAGATTAG AAAAGAAAAT GGATTTTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135224507	ENSMUSSNP592198	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49689643					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61316016 () rs orientation: forward

Symbol	Name	Function Class
Gm40061	predicted gene, 40061	within coordinates
Rr72571	regulatory region 72571	816 bp distal
Rr81199	regulatory region 81199	within coordinates
Tssr888	transcription start site region 888	1323 bp upstream