rs49689676 SNP Detail

Summary

• ID
  rs49689676
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75942225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATAGAA AAATCTCTGC
  CATAATGGAG TTCATATCCT AGTCAACACA TACCATGATT TAAATGCCCA AATTCCACGT
  GTTGGAAATT TGCACTCACT GCAGTGGTGT TGGTAAGTGA GACTTTGGGA GATGGGTGGG
  TCCTGAGGGT CCTGCCTTGG TTCATGAATG AATGGATTCG TGGCTTACCA GAAGGAAAGG
  R
  TTTAGAGCAG TTCTCTGGAG TGCTTGCTCT ATCTTGCAAC ATGATGCCCT CTGCTATGTT
  GTGATGAAGC AAGAAGCCAA CACACACACA CACACACACA CACACACACA CACAGACACA
  CACACACACA TGTGCACACA AATCAGACGC TGAGAAGATG TCAGTCATGC CCTTGGGTTT
  CTCAACCTGT ACAGCATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146770383	ENSMUSSNP5174727	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320352705	CHEV_2_75949938	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49689676					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75942225 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559651	regulatory region 559651	1679 bp distal