rs49690056 SNP Detail

Summary

• ID
  rs49690056
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172116141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAC TATGACGGTC ATCTGTCACA
  S
  AGCAAGCATG CAATGAATAT GACTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011706	PARCsnp_1.08120	PARC_SEQ	INBRED	f	SNP		C	G
ss146186683	ENSMUSSNP7114148	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320123894	CHEV_1_174218705	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49690056					SNP	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172116141 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	within coordinates
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	813 bp downstream