rs49690560 SNP Detail

Summary

• ID
  rs49690560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTTCA GACACAATAC
  ATTCACCGGG TGCCACACGT TTACACCCTG CCAGTAACAT CTGCCGCAGT CTGGGAATCA
  ACACTAACAA AGGTATGGGC AAATACTGGA AGGTTCCTAA TCTGCCTTTC AAATCCAGGT
  TTTGAGGTTG GGAGGGGACC ATCTAATTGT ATAGCCAAAG CAACTATTTG AGTGCAATAG
  R
  CTTGAGATGT TTAAGGAAGC TGGCAATGGA AATAAGTCAA GACATACTTG CAAATACATT
  AGTGTAGGTG GTGATTCTGT AATTCCTGGG ACAATTCCCA TCCCATACTG CACCAGGCGC
  TGTGCTTGCA AGGCTCCCAG CGTCAGGGGG AAGGAAGCAC AGTGACTTCC ATTTTGATCC
  TGCTGTGGGA AACTGGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681307	NES17064334	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49690560					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681307	NES17064334	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714553 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1417 bp upstream
Rr513336	regulatory region 513336	1473 bp distal
Rr513337	regulatory region 513337	1007 bp distal
Tssr4819	transcription start site region 4819	462 bp downstream
Tssr4820	transcription start site region 4820	144 bp upstream
Tssr137563	transcription start site region 137563	1562 bp downstream
Tssr137564	transcription start site region 137564	1532 bp downstream
Tssr137565	transcription start site region 137565	1395 bp downstream
Tssr137566	transcription start site region 137566	1386 bp downstream
Tssr137567	transcription start site region 137567	1018 bp downstream
Tssr137568	transcription start site region 137568	987 bp downstream
Tssr137569	transcription start site region 137569	966 bp downstream
Tssr137570	transcription start site region 137570	949 bp downstream
Tssr137571	transcription start site region 137571	611 bp downstream
Tssr137572	transcription start site region 137572	512 bp downstream
Tssr137573	transcription start site region 137573	502 bp downstream
Tssr137574	transcription start site region 137574	483 bp downstream
Tssr137575	transcription start site region 137575	473 bp downstream
Tssr137576	transcription start site region 137576	197 bp upstream
Tssr137577	transcription start site region 137577	619 bp upstream
Tssr137578	transcription start site region 137578	690 bp upstream
Tssr140504	transcription start site region 140504	1411 bp upstream
Tssr140505	transcription start site region 140505	1362 bp upstream
Tssr140506	transcription start site region 140506	942 bp upstream
Tssr140507	transcription start site region 140507	579 bp upstream
Tssr140508	transcription start site region 140508	537 bp upstream
Tssr140509	transcription start site region 140509	519 bp upstream
Tssr140510	transcription start site region 140510	471 bp upstream
Tssr140511	transcription start site region 140511	457 bp upstream
Tssr140512	transcription start site region 140512	754 bp downstream
Tssr140513	transcription start site region 140513	765 bp downstream
Tssr140514	transcription start site region 140514	798 bp downstream