rs49690981 SNP Detail

Summary

• ID
  rs49690981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89314547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAACTG AAAGAAAACT
  TGGTCCTTCC GCACCCCGAC CCTGACCCCA GCCAGAAGCC ATCAGCTGTG AAGAACTACA
  CTTCAGCATC CCTGTCAGTG TCTAAGGTGA TCAGAAAGGA GCCAAGAAAA GTGACCAAAG
  GAATGTCAAC ACATCACATG GGGGAGGGGA AGGCACATCT GAGAAAAAAC ATCCAATACG
  Y
  GGCCTTGGAG AGTTTGATTC TATATAACCC AGAATATAGT TGATTCCTGT AAGCATTTTG
  ATATATTAAT GAAATGATGC TAATTGATTA ACAAAATCGT TGTCTCTGTT TTAATCACAG
  CCAAACATAC AGTACAGACA TGGACTCCTG AACGGGACTC TGCTGCCCTC TGTAGGTCAT
  CACCATCACC TGCATGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148517948	ENSMUSSNP1995495	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49690981					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89314547 () rs orientation: forward

Symbol	Name	Function Class
Rr319439	regulatory region 319439	within coordinates
Rr324507	regulatory region 324507	77 bp proximal