rs49691055 SNP Detail

Summary

• ID
  rs49691055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152683725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACGATGGGG AAACTTCCTG ACGCTACGAA GTCGCCCAAA
  GGGAGGCTAG ACCCCATTCT GCGCGCTAGG CTGGGACCTT GAAGCCTGGA GCGCCTACCC
  R
  GCAGCTCTGA GAGAGACACC TTGAACTACC ATCCTGCCTT CTGGTAAGCA CCTAACCATG
  TCCCTGGCTG AGGCCATCAG ACTCTGGAAT GAAGGGGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145735398	ENSMUSSNP612145	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49691055					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152683725 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Tssr9423	transcription start site region 9423	184 bp downstream
Tssr9424	transcription start site region 9424	148 bp downstream
Tssr9425	transcription start site region 9425	98 bp downstream
Tssr9426	transcription start site region 9426	76 bp downstream
Tssr9427	transcription start site region 9427	58 bp downstream
Tssr9428	transcription start site region 9428	40 bp downstream
Tssr9429	transcription start site region 9429	15 bp downstream
Tssr14234	transcription start site region 14234	336 bp downstream
Tssr14235	transcription start site region 14235	1950 bp downstream