rs49691782 SNP Detail

Summary

• ID
  rs49691782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154032403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGCCTGAG GGAGGAGCTG AGCAGCAGAG GTAGAAAGAA
  GAGGTAGACA GAGACACCAC TTGTGACAGG ACAGAGACAA GATGAAGAAT GACCGGAAGT
  Y
  GGATCTACTC TGCAAAGAAA CAAAACCGTC TCTGTCGGGA GCAGCAGAGC TGCGTGAAGA
  GGGGCGGAGG TGGGGGAGGG CACACTGGAA GGAGCAGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148023894	ENSMUSSNP4559223	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320569688	CHEV_2_154016219	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49691782					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154032403 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	335 bp upstream
Rr567774	regulatory region 567774	within coordinates
Rr567775	regulatory region 567775	346 bp proximal
Rr567776	regulatory region 567776	572 bp proximal
Rr567777	regulatory region 567777	1707 bp proximal
Tssr20971	transcription start site region 20971	266 bp upstream
Tssr20972	transcription start site region 20972	280 bp upstream
Tssr20973	transcription start site region 20973	293 bp upstream
Tssr20974	transcription start site region 20974	323 bp upstream
Tssr20975	transcription start site region 20975	350 bp upstream
Tssr20976	transcription start site region 20976	785 bp upstream