rs49692606 SNP Detail

Summary

• ID
  rs49692606
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147020843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG TGTTTGTTTC AGGGACAGAG
  G
  GACTCGGTGG GTCGCTTAAA GAGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147881251	ENSMUSSNP5677866	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320548178	CHEV_2_147004659	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49692606					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147020843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	424 bp distal
Cpgi12377	CpG island 12377	within coordinates
Cpgi12378	CpG island 12378	1894 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	1367 bp proximal