rs49692708 SNP Detail

Summary

• ID
  rs49692708
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28776894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAAGTC AATTAGAATT
  TGTGTGTAGG CAAAAATAGG TACATGAGAA AAATCTGTTC ACATATTTTA AAAACAATTC
  TTATGCAGTA AAGGCTTCTA TCTCATTTTA TAACCACTCT GTATGGATAT CCACCATAAG
  TAAAACACTT AAATGTGCAA TACAATTATT TGTAAGGAAT TTACAGATAG GCAGTCCTCC
  M
  TAAATGATTA AAAATAGTGA AATGTCTTAA AAACCCCATG GAGCCCACTG TGATTCCATA
  CACTGAGTTG TTTCCCCTCT CTCTCAAACT AGACCTGCTA ATAAAAATGG AAAACAACCC
  AGCATCTTAA TTATTTATCT TTTAAGTAAA TATAAATTTT CTGGAAGTAG CTTCTTCCCT
  GGATGAGCGG ACTGCAGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52346824	NES15375480	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49692708					SNP	C	C	C	C	C	C	A	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52346824	NES15375480	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28776894 () rs orientation: forward

Symbol	Name	Function Class
Rr260043	regulatory region 260043	1894 bp distal
Rr269361	regulatory region 269361	232 bp distal
Rr269362	regulatory region 269362	93 bp proximal
Trappc12	trafficking protein particle complex 12	within coordinates