rs49693147 SNP Detail

Summary

• ID
  rs49693147
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:58318116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGTAGC TACACAGATG
  AACTCCAGGG TCTCAAAAAA TAAAGAAGAA AGTGATGGAG AAAAATACCT ACTGTTGACC
  TCAGGCCTGC TTACACATAG AAGTACCTCT CCCTCCCCCT TCCCCTCCCC TTCCTCTCCC
  CTTCCCCCTC ACACACAATT TTTCTTAAGA CAACAGCTTT CCCTTCTCTT CAATAACAAA
  W
  GAATGCACTG TTTGTACTGA GCTTCTAAAT TCACAAAAAG CCAGTAATTG TAGCCATGCC
  CAGTAAAGGC CACAATAAGC TTGCTAAGTG GCTATGTGGG TATGAGCCTC TTGATGAGAA
  AGGTTGTCTC CCATCACACA GTTTAAGAGA AAGAGTTTAG CCTGACCCTT AGAGATCTCT
  TCCAATGCCA CCCTGTCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60471668	NES16460371	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49693147					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60471668	NES16460371	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:58318116 () rs orientation: forward

Symbol	Name	Function Class
Rr404899	regulatory region 404899	643 bp upstream
Rr517409	regulatory region 517409	within coordinates
St3gal6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	within coordinates
Tssr138857	transcription start site region 138857	955 bp upstream
Tssr141615	transcription start site region 141615	1580 bp downstream
Tssr141616	transcription start site region 141616	1596 bp downstream
Tssr141617	transcription start site region 141617	1629 bp downstream